- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.17: 8 residues within 4Å:- Chain A: E.195, Y.209, Q.247, I.248, I.249
- Chain B: K.52, L.110, T.111
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:I.249, A:N.250, A:N.250, B:K.52, B:K.52
EPE.23: 7 residues within 4Å:- Chain A: K.136, R.301
- Chain B: R.30, R.72, D.73, N.74, S.75
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.30, B:N.74, A:K.136, A:R.301
- Water bridges: B:R.30, B:N.74, A:D.299
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.18: 2 residues within 4Å:- Chain A: Q.169
- Ligands: NAG.8
No protein-ligand interaction detected (PLIP)SO4.19: 6 residues within 4Å:- Chain A: I.105, P.107, V.108, N.303, W.304, E.307
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.108, A:V.108
- Water bridges: A:S.306
SO4.20: 6 residues within 4Å:- Chain A: Y.209, N.211, P.242, R.244
- Chain B: I.109
- Ligands: NAG.12
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.211
- Water bridges: A:N.211, A:N.211, A:N.211
SO4.21: 3 residues within 4Å:- Chain A: K.187, Q.188, R.294
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.188
- Salt bridges: A:K.187, A:R.294
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, L. et al., Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120. Science (2009)
- Release Date
- 2009-11-17
- Peptides
- HIV-1 HxBc2 gp120 core: A
Fab b13 heavy chain: B
Fab b13 light chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, L. et al., Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120. Science (2009)
- Release Date
- 2009-11-17
- Peptides
- HIV-1 HxBc2 gp120 core: A
Fab b13 heavy chain: B
Fab b13 light chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
L