SMTL ID : 3ie0.1 (3 other biounits)

Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

monomer

Ligands

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.24, L.129, G.130 Ligand excluded by PLIP SO4.2: 1 residues within 4Å: Chain A: P.304 Ligand excluded by PLIP SO4.3: 1 residues within 4Å: Chain A: R.24 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: R.359, G.362 Ligand excluded by PLIP SO4.5: 1 residues within 4Å: Chain A: R.368 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: R.84, L.88, R.263 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: Q.34, H.61, L.62, D.63 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: F.223, A.224, S.313, G.314 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain A: K.298, N.301, R.302, H.323, K.326, H.327 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: L.205, H.238, H.240, R.241 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain A: R.192, R.195, G.375, Y.378 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain A: R.2, V.4, G.426, G.428 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain A: P.366, R.368 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain A: P.243, R.244 Ligand excluded by PLIP SO4.15: 1 residues within 4Å: Chain A: R.73 Ligand excluded by PLIP SO4.16: 1 residues within 4Å: Chain A: H.293 Ligand excluded by PLIP SO4.17: 9 residues within 4Å: Chain A: G.140, H.141, G.164, N.165, K.168, L.171, E.226, Y.378, G.379 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain A: Y.189, F.223, R.227, G.340, Y.341, Y.378, G.379 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain A: D.96, K.99, P.252, R.256 Ligands: FLC.22 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain A: L.171, P.172, D.173, S.269, E.270 Ligand excluded by PLIP

2 x FLC: CITRATE ANION(Non-covalent)

FLC.21: 3 residues within 4Å: Chain A: K.280, N.281, R.284 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.281, A:R.284 Hydrogen bonds: A:N.281, A:N.281, A:R.284 Salt bridges: A:R.284 FLC.22: 4 residues within 4Å: Chain A: P.252, T.294, R.320 Ligands: SO4.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.320 Salt bridges: A:R.320

2 x ZN: ZINC ION(Non-covalent)

ZN.23: 5 residues within 4Å: Chain A: D.63, H.64, D.162, H.400 Ligands: ZN.24 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.63, A:H.64, A:D.162, A:H.400 ZN.24: 5 residues within 4Å: Chain A: H.59, H.61, H.141, D.162 Ligands: ZN.23 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.59, A:H.61, A:H.141, A:D.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishikawa, H. et al., Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8. To be Published

Release Date

2009-08-04

Peptides

Ribonuclease TTHA0252: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease TTHA0252

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