SMTL ID : 3ie7.1

The crystal structure of phosphofructokinase (lin2199) from Listeria innocua in complex with ATP at 1.6A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 23 residues within 4Å: Chain A: K.187, N.189, S.221, L.222, G.223, A.224, G.226, P.240, V.243, E.245, D.248, T.249, G.250, A.251, G.252, D.253, F.255, T.277, S.280, A.281, V.284 Ligands: MG.2, MG.3 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:N.189, A:S.221, A:L.222, A:G.223, A:E.245, A:E.245, A:G.250, A:G.252, A:D.253, A:D.253, A:S.280 Water bridges: A:K.187, A:E.190, A:E.192, A:S.221, A:A.224, A:A.224, A:G.226, A:D.253, A:D.253, A:T.277, A:T.277 Salt bridges: A:K.187, A:K.187 ATP.6: 23 residues within 4Å: Chain B: K.187, N.189, S.221, L.222, G.223, A.224, G.226, P.240, V.243, E.245, D.248, T.249, G.250, A.251, G.252, D.253, F.255, T.277, S.280, A.281, V.284 Ligands: MG.7, MG.8 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:N.189, B:S.221, B:L.222, B:G.223, B:E.245, B:G.250, B:G.252, B:D.253, B:D.253, B:S.280 Water bridges: B:K.187, B:K.187, B:K.187, B:E.190, B:E.192, B:S.221, B:A.224, B:A.224, B:G.226, B:T.277, B:T.277 Salt bridges: B:K.187, B:K.187

6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 1 residues within 4Å: Ligands: ATP.1 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Ligands: ATP.1 No protein-ligand interaction detected (PLIP) MG.4: 5 residues within 4Å: Chain A: G.40, K.41, R.92, G.141 Ligands: GOL.5 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Ligands: ATP.6 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Ligands: ATP.6 No protein-ligand interaction detected (PLIP) MG.9: 5 residues within 4Å: Chain B: G.40, K.41, R.92, G.141 Ligands: GOL.10 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: D.14, G.39, G.40, K.41, H.44, M.107, S.289 Ligands: MG.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.40, A:R.92, A:S.289, A:S.289 GOL.10: 8 residues within 4Å: Chain B: D.14, G.39, G.40, K.41, H.44, M.107, S.289 Ligands: MG.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.40, B:R.92, B:S.289, B:S.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satyanarayana, L. et al., The crystal structure of phosphofructokinase (lin2199) from Listeria innocua in complex with ATP at 1.6A. To be Published

Release Date

2009-08-04

Peptides

Lin2199 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lin2199 protein

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