SMTL ID : 3ifc.2 (1 other biounit)

Human muscle fructose-1,6-bisphosphatase E69Q mutant in complex with AMP and alpha fructose-6-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-tetramer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain A: V.17, K.20, G.21, A.24, G.26, T.27, G.28, E.29, L.30, T.31, K.112, Y.113, R.140, V.160, T.177 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:G.28, A:E.29, A:L.30, A:T.31, A:T.31, A:Y.113, A:Y.113, A:R.140 Water bridges: A:T.31, A:K.112 Salt bridges: A:K.112 AMP.6: 14 residues within 4Å: Chain B: V.17, K.20, G.21, A.24, G.26, T.27, G.28, E.29, L.30, T.31, K.112, Y.113, R.140, T.177 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:G.28, B:E.29, B:L.30, B:T.31, B:Y.113, B:Y.113, B:R.140 Water bridges: B:T.31, B:T.31, B:K.112, B:K.112 Salt bridges: B:K.112 AMP.11: 15 residues within 4Å: Chain C: V.17, K.20, G.21, A.24, G.26, T.27, G.28, E.29, L.30, T.31, K.112, Y.113, R.140, V.160, T.177 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:G.28, C:E.29, C:L.30, C:T.31, C:Y.113, C:Y.113, C:R.140 Water bridges: C:T.31, C:K.112, C:T.177 Salt bridges: C:K.112 AMP.16: 14 residues within 4Å: Chain D: V.17, K.20, G.21, A.24, G.26, T.27, G.28, E.29, L.30, T.31, K.112, Y.113, R.140, T.177 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:G.28, D:E.29, D:L.30, D:T.31, D:T.31, D:Y.113, D:Y.113, D:R.140 Water bridges: D:T.31, D:T.31, D:K.112, D:K.112 Salt bridges: D:K.112

4 x P6P: 6-O-phosphono-alpha-D-fructofuranose(Non-covalent)

P6P.2: 13 residues within 4Å: Chain A: D.121, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain C: R.243 Ligands: SO4.3 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:D.121, A:D.121, A:S.124, A:S.124, A:N.212, A:Y.244, A:M.248, A:Y.264, A:K.274 Water bridges: A:V.249, C:R.243 Salt bridges: A:K.274, C:R.243 P6P.7: 14 residues within 4Å: Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain D: R.243 Ligands: SO4.9 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:D.121, B:D.121, B:N.212, B:Y.215, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:Y.264, B:K.274 Water bridges: B:V.249, D:R.243 Salt bridges: B:K.274, D:R.243 P6P.12: 13 residues within 4Å: Chain A: R.243 Chain C: D.121, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Ligands: SO4.13 12 PLIP interactions: 10 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:D.121, C:D.121, C:S.124, C:S.124, C:N.212, C:Y.215, C:M.248, C:K.274 Water bridges: C:D.121, A:R.243 Salt bridges: C:K.274, A:R.243 P6P.17: 14 residues within 4Å: Chain B: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Ligands: SO4.19 11 PLIP interactions: 2 interactions with chain B, 9 interactions with chain D Water bridges: B:R.243, D:D.121 Salt bridges: B:R.243, D:K.274 Hydrogen bonds: D:D.121, D:D.121, D:N.212, D:Y.244, D:M.248, D:Y.264, D:K.274

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: D.121, G.122, S.123, S.124 Ligands: P6P.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.122, A:S.124, A:S.124, A:S.124 SO4.4: 3 residues within 4Å: Chain A: K.274, R.276, R.313 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.274, A:R.276, A:R.313 SO4.8: 3 residues within 4Å: Chain B: K.274, R.276, R.313 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.313, B:R.313 Salt bridges: B:K.274, B:R.276, B:R.313 SO4.9: 5 residues within 4Å: Chain B: D.121, G.122, S.123, S.124 Ligands: P6P.7 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.121, B:G.122, B:S.123, B:S.124, B:S.124 SO4.13: 5 residues within 4Å: Chain C: D.121, G.122, S.123, S.124 Ligands: P6P.12 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.122, C:S.124, C:S.124, C:S.124 SO4.14: 3 residues within 4Å: Chain C: K.274, R.276, R.313 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:K.274, C:R.276, C:R.313 SO4.18: 3 residues within 4Å: Chain D: K.274, R.276, R.313 5 PLIP interactions: 5 interactions with chain D Water bridges: D:R.313, D:R.313 Salt bridges: D:K.274, D:R.276, D:R.313 SO4.19: 5 residues within 4Å: Chain D: D.121, G.122, S.123, S.124 Ligands: P6P.17 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:D.121, D:D.121, D:G.122, D:S.123, D:S.124, D:S.124

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: E.98, N.99, K.100, D.101 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.100, A:D.101, A:D.101 GOL.10: 4 residues within 4Å: Chain B: E.98, N.99, K.100, D.101 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.99, B:K.100, B:D.101, B:D.101, B:D.101 GOL.15: 4 residues within 4Å: Chain C: E.98, N.99, K.100, D.101 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.100, C:D.101, C:D.101, C:D.101 GOL.20: 4 residues within 4Å: Chain D: E.98, N.99, K.100, D.101 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.99, D:K.100, D:D.101, D:D.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zarzycki, M. et al., Structure of E69Q mutant of human muscle fructose-1,6-bisphosphatase. Acta Crystallogr.,Sect.D (2011)

Release Date

2010-08-11

Peptides

Fructose-1,6-bisphosphatase isozyme 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

Fructose-1,6-bisphosphatase isozyme 2

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