SMTL ID : 3ifo.1 (1 other biounit)

X-ray structure of amyloid beta peptide:antibody (Abeta1-7:10D5) complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- GLU- PHE- ARG- HIS- ASP: Amyloid beta A4 protein(Non-covalent)

ALA-GLU-PHE-ARG-HIS-ASP.1: 19 residues within 4Å: Chain A: H.52, Y.54, W.55, D.56, D.58, R.60, R.100, I.102, T.103, D.108 Chain B: H.31, S.32, N.33, Y.37, G.96, S.97, H.98, V.99, L.101 23 PLIP interactions: 13 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:H.52, B:V.99, B:L.101, B:L.101 Hydrogen bonds: A:Y.54, A:Y.54, A:T.103, A:D.108, B:S.32, B:N.33, B:S.97, B:V.99 Water bridges: A:R.60, A:R.60, A:R.60, A:T.103, B:V.99 Salt bridges: A:D.56, A:D.58, B:H.31 pi-Stacking: A:H.52, B:Y.37 pi-Cation interactions: A:Y.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basi, G.S. et al., Structural correlates of antibodies associated with acute reversal of amyloid beta-related behavioral deficits in a mouse model of Alzheimer disease. J.Biol.Chem. (2010)

Release Date

2009-11-17

Peptides

10D5 FAB antibody heavy chain: A
10D5 FAB antibody light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

10D5 FAB antibody heavy chain

10D5 FAB antibody light chain

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