SMTL ID : 3ign.1

Crystal Structure of the GGDEF domain from Marinobacter aquaeolei diguanylate cyclase complexed with c-di-GMP - Northeast Structural Genomics Consortium Target MqR89a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.1: 10 residues within 4Å: Chain A: N.76, I.77, R.78, D.81, T.98, S.102, V.105, I.106, R.109 Ligands: C2E.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.78, A:R.78, A:R.78, A:T.98, A:T.98, A:R.109, A:R.109 Water bridges: A:S.102 Salt bridges: A:R.78, A:D.81 pi-Cation interactions: A:R.78 C2E.2: 6 residues within 4Å: Chain A: N.76, I.77, R.78, Q.79, R.109 Ligands: C2E.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.78, A:Q.79, A:Q.79, A:R.109, A:R.109 Water bridges: A:I.77, A:S.80, A:S.80 pi-Cation interactions: A:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vorobiev, S.M. et al., Crystal structure of a catalytically active GG(D/E)EF diguanylate cyclase domain from Marinobacter aquaeolei with bound c-di-GMP product. J.Struct.Funct.Genom. (2012)

Release Date

2009-08-11

Peptides

Diguanylate cyclase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Diguanylate cyclase