SMTL ID : 3ih0.1

Crystal structure of an uncharacterized sugar kinase PH1459 from Pyrococcus horikoshii in complex with AMP-PNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 15 residues within 4Å: Chain A: N.162, K.190, T.215, G.217, P.218, G.220, F.221, S.234, Y.235, V.237, P.239, T.242, A.245, G.246, A.276 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.164, A:K.190, A:G.246 Water bridges: A:D.160, A:R.164, A:K.190, A:T.215, A:G.217, A:V.237, A:T.242, A:A.277

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: F.101, L.102, L.103, D.105, R.137, L.167, R.169 Chain B: H.86 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:F.101, A:L.103, A:D.105, A:R.137, A:R.169 Water bridges: B:H.86 GOL.3: 8 residues within 4Å: Chain A: H.86 Chain B: F.101, L.102, L.103, D.105, R.137, L.167, R.169 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:F.101, B:L.103, B:D.105, B:R.137, B:R.169 Water bridges: B:R.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, G. et al., Crystal structure of an uncharacterized sugar kinase PH1459 from Pyrococcus horikoshii in complex with AMP-PNP. To be Published

Release Date

2009-09-08

Peptides

Uncharacterized sugar kinase PH1459: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized sugar kinase PH1459

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