SMTL ID : 3ihv.2 (1 other biounit)

Crystal structure of SusD homolog (NP_813570.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: I.51, F.465, E.466, G.467, H.468, R.469 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: K.21, Y.116, R.186, R.192 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: G.252, F.265, N.389, N.391 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.265, A:N.391, A:N.391 Water bridges: A:N.391 NA.4: 3 residues within 4Å: Chain A: G.491, Y.492, W.494 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.494

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: V.309, R.313, R.321, D.322, I.325, N.327 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.313 Water bridges: A:I.325, A:N.327, A:N.327 EDO.6: 6 residues within 4Å: Chain A: W.81, Y.85, M.141, D.522, F.529 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.521 EDO.7: 6 residues within 4Å: Chain A: P.151, Y.154, D.522, L.525, C.526 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.522 Water bridges: A:S.147, A:Y.154 EDO.8: 7 residues within 4Å: Chain A: Y.28, N.31, T.32, Y.191, I.263, S.264 Ligands: EDO.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.28, A:N.31, A:S.264, A:S.264 EDO.9: 5 residues within 4Å: Chain A: E.167, Y.206, K.219, A.222 Ligands: EDO.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.167, A:Y.206 EDO.10: 4 residues within 4Å: Chain A: E.217, E.410, W.411, H.413 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.411 Water bridges: A:H.413 EDO.11: 5 residues within 4Å: Chain A: D.50, F.308, K.457, S.460, R.469 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.50, A:D.50, A:S.460, A:R.469 EDO.12: 8 residues within 4Å: Chain A: Y.28, Y.191, R.192, F.193, I.261, E.262, I.263 Ligands: EDO.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.262 Water bridges: A:E.262, A:E.262 EDO.13: 4 residues within 4Å: Chain A: E.3, Y.85, T.86, Y.89 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.86, A:T.86 EDO.14: 4 residues within 4Å: Chain A: E.167, W.209, K.219 Ligands: EDO.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.167, A:K.219 Water bridges: A:D.216, A:K.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of SusD homolog (NP_813570.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution. To be Published

Release Date

2009-08-11

Peptides

SusD homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SusD homolog

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