SMTL ID : 3ii0.3 (5 other biounits)

Crystal structure of human Glutamate oxaloacetate transaminase 1 (GOT1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 13 residues within 4Å: Chain A: G.96, G.97, T.98, W.129, N.183, D.211, A.213, Y.214, S.244, S.246, K.247, R.255 Ligands: TAR.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:N.183, A:A.213 Hydrogen bonds: A:G.97, A:T.98, A:T.98, A:T.98, A:N.183, A:Y.214, A:S.244, A:S.244, A:S.246 Salt bridges: A:R.255 pi-Stacking: A:W.129, A:W.129

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.2: 11 residues within 4Å: Chain A: V.6, F.7, V.26, G.27, W.129, N.183, Y.214, K.247, F.349, R.375 Ligands: PLP.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.27, A:W.129, A:N.183, A:Y.214, A:K.247, A:K.247 Water bridges: A:R.375, A:R.375 Salt bridges: A:K.247, A:R.375

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: Y.112, N.113, F.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.113 Water bridges: A:G.114 EDO.4: 3 residues within 4Å: Chain A: I.144, R.145, S.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.146, A:S.146 EDO.5: 4 residues within 4Å: Chain A: Y.29, T.31, W.37, T.314 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.29 Water bridges: A:D.32 EDO.6: 5 residues within 4Å: Chain A: R.69, S.70, S.73, V.89, G.91 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.91 Water bridges: A:R.69, A:R.69, A:S.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ugochukwu, E. et al., Crystal structure of human Glutamate oxaloacetate transaminase 1 (GOT1). To be Published

Release Date

2009-08-11

Peptides

Aspartate aminotransferase, cytoplasmic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Aspartate aminotransferase, cytoplasmic

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