SMTL ID : 3iid.1

Crystal structure of the macro domain of human histone macroH2A1.1 in complex with ADP-ribose (form A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 23 residues within 4Å: Chain A: A.44, D.45, I.46, P.57, T.58, N.59, Y.63, G.65, G.66, E.67, V.68, T.71, S.117, S.152, I.153, G.154, S.155, G.156, R.157, N.158, K.162, F.193, D.194 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:D.45, A:D.45, A:I.46, A:N.59, A:G.65, A:G.66, A:E.67, A:V.68, A:S.117, A:G.154, A:S.155, A:G.156, A:R.157, A:N.158, A:N.158, A:K.162, A:S.197 Water bridges: A:P.57, A:I.64, A:G.69, A:S.152, A:D.194, A:D.194

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 4 residues within 4Å: Chain A: T.30, K.31, S.32, K.38 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.30, A:S.32, A:K.38 Water bridges: A:T.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timinszky, G. et al., A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation. Nat.Struct.Mol.Biol. (2009)

Release Date

2009-08-18

Peptides

Core histone macro-H2A.1, Isoform 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Core histone macro-H2A.1, Isoform 1

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