SMTL ID : 3iil.1

The structure of hCINAP-MgADP-Pi complex at 2.0 angstroms resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x LI: LITHIUM ION(Non-covalent)

LI.1: 3 residues within 4Å: Chain A: P.20, Y.119, K.123 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 17 residues within 4Å: Chain A: T.19, P.20, G.21, V.22, G.23, K.24, T.25, T.26, R.113, R.117, S.154, N.155, K.156, P.157, L.160 Ligands: MG.5, PO4.6 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.21, A:V.22, A:G.23, A:K.24, A:T.25, A:T.26, A:T.26, A:R.113, A:K.156, A:L.160 Water bridges: A:T.25, A:R.117, A:R.117, A:R.117, A:R.117 Salt bridges: A:K.24, A:R.117, A:R.117 pi-Cation interactions: A:R.113, A:R.113

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.3: 2 residues within 4Å: Chain A: P.6, E.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.7, H2O.7 MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain A: T.25, N.41 Ligands: ADP.2, PO4.6 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.25, H2O.1, H2O.2, H2O.2, H2O.2

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 6 residues within 4Å: Chain A: P.20, K.24, Y.86, H.87 Ligands: ADP.2, MG.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.87 Water bridges: A:N.41, A:N.41, A:N.41, A:D.85 Salt bridges: A:K.24, A:H.87

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 4 residues within 4Å: Chain A: Y.137, V.149, H.150, Q.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.151, A:Q.151 Water bridges: A:H.150, A:H.150 SO4.8: 3 residues within 4Å: Chain A: K.145, E.146, E.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.146, A:E.146 SO4.9: 2 residues within 4Å: Chain A: N.120, E.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.121 SO4.10: 2 residues within 4Å: Chain A: W.174, H.178 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.178 Salt bridges: A:H.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drakou, C.E. et al., hCINAP is an atypical mammalian nuclear adenylate kinase with an ATPase motif: Structural and functional studies. Proteins (2012)

Release Date

2010-10-06

Peptides

Coilin-interacting nuclear ATPase protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coilin-interacting nuclear ATPase protein

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