SMTL ID : 3il6.1

Structure of E. faecalis FabH in complex with 2-({4-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-phenoxybenzoyl}amino)benzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x B83: 2-[({4-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-phenoxyphenyl}carbonyl)amino]benzoic acid(Non-covalent)

B83.1: 17 residues within 4Å: Chain A: R.38, C.113, S.153, V.156, L.157, M.214, G.216, R.217, I.219, F.220, H.246, A.248, N.249, I.252, N.276, F.308, G.309 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.156, A:L.157, A:R.217, A:I.219, A:F.220, A:F.220, A:A.248, A:N.249, A:F.308 Hydrogen bonds: A:N.276 Salt bridges: A:H.246 B83.8: 17 residues within 4Å: Chain B: R.38, C.113, S.153, V.156, L.157, M.214, G.216, R.217, I.219, F.220, H.246, A.248, N.249, I.252, N.276, F.308, G.309 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.156, B:L.157, B:R.217, B:I.219, B:F.220, B:F.220, B:A.248, B:N.249, B:F.308 Hydrogen bonds: B:N.276 Salt bridges: B:H.246

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.6, A.170, E.171, T.172, H.174 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.171, A:T.172 Salt bridges: A:R.6, A:H.174 SO4.3: 5 residues within 4Å: Chain A: K.2, R.6, A.170, E.171 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.171 Salt bridges: A:K.2, A:R.6 SO4.4: 2 residues within 4Å: Chain A: K.255, R.258 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.255, A:R.258 SO4.5: 2 residues within 4Å: Chain A: R.217, K.255 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.217, A:K.255 SO4.6: 5 residues within 4Å: Chain A: V.250, T.269, N.270, M.271, D.272 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.271, A:D.272 Water bridges: A:G.40 SO4.7: 2 residues within 4Å: Chain A: E.16, R.45 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.45 SO4.9: 6 residues within 4Å: Chain B: R.6, A.170, E.171, T.172, H.174 Ligands: SO4.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.171, B:T.172 Salt bridges: B:R.6, B:H.174 SO4.10: 5 residues within 4Å: Chain B: K.2, R.6, A.170, E.171 Ligands: SO4.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.171 Salt bridges: B:K.2, B:R.6 SO4.11: 2 residues within 4Å: Chain B: K.255, R.258 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.255, B:R.258 SO4.12: 2 residues within 4Å: Chain B: R.217, K.255 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.217, B:K.255 SO4.13: 5 residues within 4Å: Chain B: V.250, T.269, N.270, M.271, D.272 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.269, B:M.271, B:D.272 Water bridges: B:G.40 SO4.14: 2 residues within 4Å: Chain B: E.16, R.45 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gajiwala, K.S. et al., Crystal structures of bacterial FabH suggest a molecular basis for the substrate specificity of the enzyme. Febs Lett. (2009)

Release Date

2009-08-25

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3-oxoacyl-[acyl-carrier-protein] synthase 3