SMTL ID : 3ilk.1

The structure of a probable methylase family protein from Haemophilus influenzae Rd KW20

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-dimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: T.81, F.113, G.114, L.143, L.145, A.148 Ligands: EDO.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.81, A:T.81, A:L.143 Water bridges: A:G.114 EDO.2: 6 residues within 4Å: Chain A: T.81, S.82, L.132, N.133, I.134 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.134, A:I.134 EDO.3: 6 residues within 4Å: Chain B: S.82, L.132, N.133, I.134, L.143 Ligands: SO4.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.132, B:I.134, B:S.141, B:L.143 EDO.4: 2 residues within 4Å: Chain B: R.86, H.87 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.86, B:H.87, B:H.87 EDO.5: 3 residues within 4Å: Chain A: S.23 Chain B: N.144, M.147 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 5 residues within 4Å: Chain B: N.133, I.134, P.135, A.136, P.138 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.133, B:N.133, B:A.136

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 6 residues within 4Å: Chain A: R.26 Chain B: H.17, N.20, E.116, R.117, N.144 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.20, B:N.144 Water bridges: B:L.145, A:R.26 Salt bridges: B:H.17, B:R.117, A:R.26 SO4.8: 8 residues within 4Å: Chain B: T.81, G.114, R.115, E.116, G.119, L.143, L.145 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.81, B:G.114, B:L.143 Water bridges: B:L.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The structure of a probable methylase family protein from Haemophilus influenzae Rd KW20. To be Published

Release Date

2009-09-01

Peptides

Uncharacterized tRNA/rRNA methyltransferase HI0380: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized tRNA/rRNA methyltransferase HI0380