SMTL ID : 3ilw.1

Structure of DNA gyrase subunit A N-terminal domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: A.70, P.78, V.80, D.81, G.82, T.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.82, A:G.82 Water bridges: A:G.82 GOL.2: 7 residues within 4Å: Chain A: L.18, H.22, R.68, L.79, N.142, N.146, G.147 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.68, A:N.142, A:N.142 Water bridges: A:K.19, A:R.68, A:G.147, A:S.148, A:G.149 GOL.3: 7 residues within 4Å: Chain A: P.20, R.23, R.24, I.123, E.132, P.133, T.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.23, A:P.133 GOL.4: 6 residues within 4Å: Chain A: A.48, E.49, N.53 Chain B: R.45, A.48, E.49 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.48, A:N.53, A:N.53, B:R.45 GOL.5: 6 residues within 4Å: Chain B: A.70, P.78, V.80, D.81, G.82, T.105 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.70, B:D.81, B:D.81, B:G.82 GOL.6: 7 residues within 4Å: Chain B: L.18, R.68, L.79, N.142, N.146, G.147, S.148 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.68, B:N.142, B:N.142, B:N.146, B:G.147 Water bridges: B:G.149 GOL.7: 4 residues within 4Å: Chain B: D.179, A.180, D.181, E.184 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.181, B:D.181, B:E.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tretter, E.M. et al., Crystal structure of the DNA gyrase GyrA N-terminal domain from Mycobacterium tuberculosis. Proteins (2010)

Release Date

2009-10-06

Peptides

DNA gyrase subunit A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA gyrase subunit A