SMTL ID : 3imh.1 (1 other biounit)

CRYSTAL STRUCTURE OF GALACTOSE 1-EPIMERASE FROM Lactobacillus acidophilus NCFM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: H.283 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.283, H2O.1, H2O.17 MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Chain B: H.283 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.283, H2O.20, H2O.36 MG.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.19: 1 residues within 4Å: Chain C: H.283 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.283, H2O.39, H2O.55 MG.20: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.28: 1 residues within 4Å: Chain D: H.283 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.283, H2O.59, H2O.74 MG.29: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: H.85, G.86 Chain D: P.132 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: N.282, G.291, Q.292 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: H.85, G.86 Chain C: P.132 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: N.282, G.291, Q.292 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain A: P.132 Chain C: H.85, G.86 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Chain C: N.282, G.291, Q.292 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain B: P.132 Chain D: H.85, G.86 Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain D: N.282, G.291, Q.292 Ligand excluded by PLIP

20 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: F.66, H.102, H.175, Y.177, Y.276, H.280 Ligands: GOL.5 Ligand excluded by PLIP GOL.5: 8 residues within 4Å: Chain A: G.76, R.77, H.102, H.175, D.243, V.274, E.299 Ligands: GOL.4 Ligand excluded by PLIP GOL.6: 5 residues within 4Å: Chain A: R.77, D.96, E.201, A.202, R.239 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: K.13, Y.36, S.61, E.63, M.109 Ligand excluded by PLIP GOL.9: 4 residues within 4Å: Chain A: D.119, H.122, R.124, E.149 Ligand excluded by PLIP GOL.13: 7 residues within 4Å: Chain B: F.66, H.102, H.175, Y.177, Y.276, H.280 Ligands: GOL.14 Ligand excluded by PLIP GOL.14: 8 residues within 4Å: Chain B: G.76, R.77, H.102, H.175, D.243, V.274, E.299 Ligands: GOL.13 Ligand excluded by PLIP GOL.15: 5 residues within 4Å: Chain B: R.77, D.96, E.201, A.202, R.239 Ligand excluded by PLIP GOL.16: 5 residues within 4Å: Chain B: K.13, Y.36, S.61, E.63, M.109 Ligand excluded by PLIP GOL.18: 4 residues within 4Å: Chain B: D.119, H.122, R.124, E.149 Ligand excluded by PLIP GOL.22: 7 residues within 4Å: Chain C: F.66, H.102, H.175, Y.177, Y.276, H.280 Ligands: GOL.23 Ligand excluded by PLIP GOL.23: 8 residues within 4Å: Chain C: G.76, R.77, H.102, H.175, D.243, V.274, E.299 Ligands: GOL.22 Ligand excluded by PLIP GOL.24: 5 residues within 4Å: Chain C: R.77, D.96, E.201, A.202, R.239 Ligand excluded by PLIP GOL.25: 5 residues within 4Å: Chain C: K.13, Y.36, S.61, E.63, M.109 Ligand excluded by PLIP GOL.27: 4 residues within 4Å: Chain C: D.119, H.122, R.124, E.149 Ligand excluded by PLIP GOL.31: 7 residues within 4Å: Chain D: F.66, H.102, H.175, Y.177, Y.276, H.280 Ligands: GOL.32 Ligand excluded by PLIP GOL.32: 8 residues within 4Å: Chain D: G.76, R.77, H.102, H.175, D.243, V.274, E.299 Ligands: GOL.31 Ligand excluded by PLIP GOL.33: 5 residues within 4Å: Chain D: R.77, D.96, E.201, A.202, R.239 Ligand excluded by PLIP GOL.34: 5 residues within 4Å: Chain D: K.13, Y.36, S.61, E.63, M.109 Ligand excluded by PLIP GOL.36: 4 residues within 4Å: Chain D: D.119, H.122, R.124, E.149 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., CRYSTAL STRUCTURE OF GALACTOSE 1-EPIMERASE FROM Lactobacillus acidophilus. To be Published

Release Date

2009-08-18

Peptides

Galactose-1-epimerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Galactose-1-epimerase

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