SMTL ID : 3imx.1

Crystal Structure of human glucokinase in complex with a synthetic activator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 14 residues within 4Å: Chain A: S.141, F.142, P.143, T.158, K.159, N.194, D.195, I.215, G.219, C.220, N.221, E.246, Q.277, E.280 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.158, A:T.158, A:K.159, A:N.194, A:N.194, A:C.220, A:N.221, A:E.246, A:Q.277 Water bridges: A:D.195, A:C.220, A:E.246 Salt bridges: A:K.159

1 x B84: (2R)-3-cyclopentyl-N-(5-methoxy[1,3]thiazolo[5,4-b]pyridin-2-yl)-2-{4-[(4-methylpiperazin-1-yl)sulfonyl]phenyl}propanamide(Non-covalent)

B84.2: 21 residues within 4Å: Chain A: Y.51, V.52, R.53, S.54, P.56, S.59, E.60, V.81, W.89, I.149, M.200, I.201, Y.204, Y.205, H.208, M.225, L.441, V.442, V.445, A.446, K.449 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.52, A:I.201, A:Y.204, A:Y.204, A:Y.204, A:V.445, A:K.449 Hydrogen bonds: A:R.53, A:R.53, A:S.59 pi-Stacking: A:Y.204

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: M.228, V.231, V.234, G.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.231 Water bridges: A:D.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bebernitz, G.R. et al., Investigation of functionally liver selective glucokinase activators for the treatment of type 2 diabetes. J.Med.Chem. (2009)

Release Date

2009-10-06

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase