SMTL ID : 3in1.1 (1 other biounit)

Crystal structure of a putative Ribokinase in complex with ADP from E.coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: N.198, K.229, G.231, K.232, G.234, A.248, V.249, I.252, T.257, A.260, F.264, N.286, A.289 Ligands: NA.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.198, A:G.231, A:I.252, A:T.257, A:N.286 Water bridges: A:N.198, A:K.232, A:V.249, A:A.290 ADP.3: 17 residues within 4Å: Chain B: N.198, K.229, T.230, G.231, K.232, G.234, A.248, V.249, I.252, A.254, T.257, A.260, F.264, N.286, A.289, V.293 Ligands: NA.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.198, B:T.230, B:G.231, B:I.252, B:N.286 Water bridges: B:I.252

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: T.257, A.260, G.261 Ligands: ADP.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.257, A:G.261 Water bridges: A:D.262 NA.4: 4 residues within 4Å: Chain B: T.257, A.260, G.261 Ligands: ADP.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.257, B:A.260, B:G.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satyanarayana, L. et al., Crystal structure of a putative Ribokinase in complex with ADP from E.coli. To be Published

Release Date

2009-09-08

Peptides

Uncharacterized sugar kinase ydjH: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized sugar kinase ydjH

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