SMTL ID : 3ioc.1

Crystal Structure of Mycobacterium Tuberculosis Pantothenate Synthetase at 2.50 Ang resolution in complex with 5'-deoxy-5'-(benzyldisulfanyl)-adenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: M.110, Y.111, P.112, D.113, G.114, L.115, R.116, T.117, K.146 Chain B: D.175 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.111, A:D.113, A:R.116, A:T.117, A:K.146, A:K.146 GOL.2: 2 residues within 4Å: Chain A: P.112, D.113 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.112

2 x A5D: (2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-[(benzyldisulfanyl)methyl]tetrahydrofuran-3,4-diol(Non-covalent)

A5D.3: 17 residues within 4Å: Chain A: P.39, T.40, M.41, H.45, G.47, H.48, L.51, V.143, V.144, F.158, G.159, K.161, D.162, Q.165, T.187, V.188, M.196 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.39, A:V.143, A:V.144 Hydrogen bonds: A:G.159, A:D.162, A:D.162, A:Q.165, A:V.188, A:V.188 A5D.4: 18 residues within 4Å: Chain B: P.39, T.40, M.41, H.45, G.47, H.48, L.51, N.70, V.140, V.144, F.158, G.159, K.161, D.162, Q.165, T.187, V.188, M.196 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:P.39, B:V.140, B:V.144 Hydrogen bonds: B:G.159, B:D.162, B:D.162, B:V.188, B:V.188 Water bridges: B:Q.165, B:Q.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.E. et al., A Fragment-Based Approach to Probing Adenosine Recognition Sites by Using Dynamic Combinatorial Chemistry. Chembiochem (2009)

Release Date

2009-12-01

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate synthetase

Related Entries With Identical Sequence