SMTL ID : 3ion.1

PDK1 in complex with Compound 8h

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 8H1: 2-(5-{[(2S)-2-amino-3-phenylpropyl]oxy}pyridin-3-yl)-8,9-dimethoxybenzo[c][2,7]naphthyridin-4-amine(Non-covalent)

8H1.1: 22 residues within 4Å: Chain A: L.41, G.42, E.43, G.44, S.47, V.49, A.62, K.64, V.96, L.112, S.113, Y.114, A.115, K.116, G.118, E.119, E.162, N.163, L.165, T.175, D.176 Ligands: SO4.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.41, A:V.49, A:A.62, A:Y.114, A:L.165, A:L.165, A:T.175 Hydrogen bonds: A:K.64, A:S.113, A:A.115, A:N.163 Water bridges: A:D.176

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.44, S.45, F.46, S.47 Ligands: 8H1.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.45, A:F.46, A:S.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nittoli, T. et al., The identification of 8,9-dimethoxy-5-(2-aminoalkoxy-pyridin-3-yl)-benzo[c][2,7]naphthyridin-4-ylamines as potent inhibitors of 3-phosphoinositide-dependent kinase-1 (PDK-1). Eur.J.Med.Chem. (2010)

Release Date

2010-02-09

Peptides

3-phosphoinositide-dependent protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoinositide-dependent protein kinase 1

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