SMTL ID : 3ip1.1

Structure of putative alcohol dehydrogenase (TM_042) from Thermotoga maritima

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-tetramer

Ligands

8 x CD: CADMIUM ION(Non-covalent)

CD.1: 6 residues within 4Å: Chain A: C.133, G.134, C.136, C.139, C.147, E.148 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.133, A:C.136, A:C.139, A:C.147 CD.2: 4 residues within 4Å: Chain A: C.68, H.97, E.98, E.195 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.97, A:E.98, A:E.195, H2O.7 CD.4: 6 residues within 4Å: Chain B: C.133, G.134, C.136, C.139, C.147, E.148 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.133, B:C.136, B:C.139, B:C.147 CD.5: 4 residues within 4Å: Chain B: C.68, H.97, E.98, E.195 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.68, B:H.97, B:E.98, B:E.195, H2O.11, H2O.12 CD.8: 6 residues within 4Å: Chain C: C.133, G.134, C.136, C.139, C.147, E.148 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.133, C:C.136, C:C.139, C:C.147 CD.9: 4 residues within 4Å: Chain C: C.68, H.97, E.98, E.195 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.97, C:E.98, C:E.195, H2O.17, H2O.18 CD.11: 6 residues within 4Å: Chain D: C.133, G.134, C.136, C.139, C.147, E.148 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.133, D:C.136, D:C.139, D:C.147 CD.12: 4 residues within 4Å: Chain D: C.68, H.97, E.98, E.195 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:C.68, D:H.97, D:E.98, D:E.195, H2O.24, H2O.24

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: F.143, P.144, N.145, H.146, H.347 Chain D: R.335 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain B: F.143, P.144, N.145, H.146, H.347 Chain C: R.335 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain B: R.335 Chain C: F.143, P.144, N.145, H.146, H.347 Ligand excluded by PLIP CL.13: 6 residues within 4Å: Chain A: R.335 Chain D: F.143, P.144, N.145, H.146, H.347 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 7 residues within 4Å: Chain B: I.67, G.69, P.224, L.383, V.390, K.391, V.392 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.391, B:K.391, B:V.392, B:V.392 Water bridges: B:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Structure of putative alcohol dehydrogenase (TM_042) from Thermotoga maritima. To be published

Release Date

2009-09-29

Peptides

Alcohol dehydrogenase, zinc-containing: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Alcohol dehydrogenase, zinc-containing