SMTL ID : 3ipi.1

Crystal Structure of a Geranyltranstransferase from the Methanosarcina mazei

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

12 x MLA: MALONIC ACID(Non-covalent)

MLA.1: 8 residues within 4Å: Chain A: I.18, S.21, V.34, C.38, E.72, M.73, S.76, L.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.21, A:S.76 Water bridges: A:E.72 Salt bridges: A:K.116 MLA.2: 7 residues within 4Å: Chain A: G.42, K.43, R.44, I.45, R.46, E.72, H.75 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.43, A:R.44, A:I.45 Water bridges: A:R.46, A:R.46, A:R.46, A:S.76 Salt bridges: A:R.44, A:R.46 MLA.3: 3 residues within 4Å: Chain A: E.9, Y.13, Y.61 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.13 MLA.4: 6 residues within 4Å: Chain A: E.55, G.59, R.264, C.266, P.267, A.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.268 Salt bridges: A:R.264 MLA.5: 5 residues within 4Å: Chain A: H.194, N.197, A.198, H.252, A.255 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.198, A:A.255 Salt bridges: A:H.194, A:H.252 MLA.6: 5 residues within 4Å: Chain A: I.56, C.57, L.188, F.263, R.264 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.56 Hydrogen bonds: A:R.264 Water bridges: A:R.191 Salt bridges: A:R.191 MLA.7: 8 residues within 4Å: Chain B: I.18, S.21, V.34, C.38, E.72, M.73, S.76, L.113 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.21, B:S.76 Water bridges: B:E.72 Salt bridges: B:K.116 MLA.8: 7 residues within 4Å: Chain B: G.42, K.43, R.44, I.45, R.46, E.72, H.75 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:K.43, B:R.44, B:I.45 Water bridges: B:R.46, B:R.46, B:R.46, B:S.76 Salt bridges: B:R.44, B:R.46 MLA.9: 3 residues within 4Å: Chain B: E.9, Y.13, Y.61 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.13 MLA.10: 6 residues within 4Å: Chain B: E.55, G.59, R.264, C.266, P.267, A.268 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.268 Salt bridges: B:R.264 MLA.11: 5 residues within 4Å: Chain B: H.194, N.197, A.198, H.252, A.255 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.198, B:A.255 Salt bridges: B:H.194, B:H.252 MLA.12: 5 residues within 4Å: Chain B: I.56, C.57, L.188, F.263, R.264 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.56 Hydrogen bonds: B:R.264 Water bridges: B:R.191 Salt bridges: B:R.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumaran, D. et al., Crystal Structure of a Geranyltranstransferase from the Methanosarcina mazei. To be Published

Release Date

2009-09-08

Peptides

Geranyltranstransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Geranyltranstransferase