SMTL ID : 3irc.2 (1 other biounit)

Crystal structure analysis of dengue-1 envelope protein domain III

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-trimer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: V.9, M.10 Chain B: V.9, M.10 Chain C: M.10 Ligands: SO4.5, SO4.9 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: A:M.10, B:M.10, C:M.10 SO4.2: 1 residues within 4Å: Chain A: N.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.75, A:N.75 SO4.3: 3 residues within 4Å: Chain A: G.92, E.93 Chain B: T.38 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.38, A:E.93 SO4.4: 2 residues within 4Å: Chain A: K.19, Q.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.32 Salt bridges: A:K.19 SO4.5: 7 residues within 4Å: Chain A: M.10 Chain B: V.9, M.10 Chain C: V.9, M.10 Ligands: SO4.1, SO4.9 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: A:M.10, B:M.10, C:M.10 SO4.6: 1 residues within 4Å: Chain B: N.75 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.75, B:N.75 SO4.7: 3 residues within 4Å: Chain B: G.92, E.93 Chain C: T.38 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.38, B:E.93 SO4.8: 2 residues within 4Å: Chain B: K.19, Q.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.32 Salt bridges: B:K.19 SO4.9: 7 residues within 4Å: Chain A: V.9, M.10 Chain B: M.10 Chain C: V.9, M.10 Ligands: SO4.1, SO4.5 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: A:M.10, B:M.10, C:M.10 SO4.10: 1 residues within 4Å: Chain C: N.75 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.75, C:N.75 SO4.11: 3 residues within 4Å: Chain A: T.38 Chain C: G.92, E.93 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:T.38, C:E.93 SO4.12: 2 residues within 4Å: Chain C: K.19, Q.32 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.32 Salt bridges: C:K.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, C.A. et al., Crystal Structure Analysis of the Dengue-1 Envelope Protein Domain III. To be Published

Release Date

2009-09-29

Peptides

ENVELOPE PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

ENVELOPE PROTEIN

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