SMTL ID : 3isi.1

Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x B88: (2S)-2-{[(S)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]methyl}butanedioic acid(Non-covalent)

B88.1: 15 residues within 4Å: Chain A: D.22, Y.68, E.123, H.150, N.151, H.191, H.212, R.223, K.247, F.248, D.320, G.323, T.324 Ligands: ZN.2, ZN.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.248 Hydrogen bonds: A:E.123, A:D.320 Water bridges: A:N.151 Salt bridges: A:H.191, A:H.212, A:R.223, A:K.247

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: H.20, D.22, S.66, E.123, D.320 Ligands: B88.1, ZN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.20, A:D.22, A:E.123, H2O.13 ZN.3: 5 residues within 4Å: Chain A: E.123, H.191, H.212 Ligands: B88.1, ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.123, A:H.191, A:H.212, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, T.T. et al., Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide. To be Published

Release Date

2010-08-04

Peptides

renal dipeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

renal dipeptidase

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