SMTL ID : 3isq.1

Crystal structure of human 4-Hydroxyphenylpyruvate dioxygenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 3 residues within 4Å: Chain A: H.176, H.259, E.342 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.176, A:H.259, A:E.342, H2O.2, H2O.4 CO.8: 3 residues within 4Å: Chain B: H.176, H.259, E.342 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.176, B:H.259, B:E.342, H2O.20, H2O.22

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: H.211 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain B: H.211 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: H.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.11 NA.10: 1 residues within 4Å: Chain B: H.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.11

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: Q.291, E.294 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: Y.214, K.362, E.365, E.366, L.374 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.362, A:K.362, A:E.365 EDO.6: 3 residues within 4Å: Chain A: Q.291, K.295 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.7: 3 residues within 4Å: Chain A: W.115, F.126, Y.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.153, A:Y.153 Water bridges: A:R.112 EDO.11: 3 residues within 4Å: Chain B: Q.291, E.294 Ligands: EDO.13 No protein-ligand interaction detected (PLIP) EDO.12: 5 residues within 4Å: Chain B: Y.214, K.362, E.365, E.366, L.374 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.362, B:K.362 EDO.13: 3 residues within 4Å: Chain B: Q.291, K.295 Ligands: EDO.11 No protein-ligand interaction detected (PLIP) EDO.14: 3 residues within 4Å: Chain B: W.115, F.126, Y.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.153 Water bridges: B:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pilka, E.S. et al., Crystal structure of human 4-Hydroxyphenylpyruvate dioxygenase. to be published

Release Date

2009-09-15

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase