SMTL ID : 3isz.1

Crystal structure of mono-zinc form of succinyl-diaminopimelate desuccinylase from Haemophilus influenzae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.67, D.100, E.134, E.135, E.163 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.67, A:D.100, A:E.163, A:E.163, H2O.8 ZN.3: 6 residues within 4Å: Chain B: H.67, D.100, M.101, E.134, E.135, E.163 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.67, B:D.100, B:E.163, B:E.163, H2O.13

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.178, R.179, G.322, G.323 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.179, A:G.323 Salt bridges: A:R.178, A:R.179 SO4.4: 5 residues within 4Å: Chain B: R.178, R.179, R.258, G.322, G.323 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.179, B:G.323 Water bridges: B:R.179, B:R.179 Salt bridges: B:R.178, B:R.179, B:R.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B.P. et al., Structural basis for catalysis by the mono- and dimetalated forms of the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase. J.Mol.Biol. (2010)

Release Date

2009-11-10

Peptides

Succinyl-diaminopimelate desuccinylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Succinyl-diaminopimelate desuccinylase

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