SMTL ID : 3itk.1

Crystal structure of human UDP-glucose dehydrogenase Thr131Ala, apo form.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 7 residues within 4Å: Chain A: K.265, F.266, F.273, G.274, F.278, F.339, K.340 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.266, A:G.274, A:G.274 Water bridges: A:R.443 PG4.7: 9 residues within 4Å: Chain C: K.265, F.266, L.267, K.268, F.273, G.274, F.278, F.339, K.340 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:F.266, C:L.267, C:K.268, C:G.274 Water bridges: C:F.339 PG4.8: 6 residues within 4Å: Chain C: M.359, D.360, D.390, Q.391, R.394 Chain E: Y.97 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.360, C:D.390, C:Q.391 PG4.10: 7 residues within 4Å: Chain D: F.266, L.267, K.268, F.273, G.274, F.278, F.339 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:F.266, D:L.267, D:K.268, D:G.274 Water bridges: D:F.339 PG4.19: 10 residues within 4Å: Chain F: L.164, A.165, E.166, F.266, F.273, G.274, F.278, F.339, K.340, R.443 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:G.274, F:R.443, F:R.443 Water bridges: F:E.166, F:S.270, F:S.276, F:E.417, F:E.417

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: M.359, D.360, Q.391, R.394 Chain C: Y.97 Ligand excluded by PLIP EDO.3: 1 residues within 4Å: Chain B: V.90 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain B: E.30, R.32, K.68, F.71 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain B: D.172, P.176, D.177 Ligand excluded by PLIP EDO.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain C: M.27, H.202 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain B: Y.97 Chain D: M.359, D.360, G.362, Q.391, L.395 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain D: F.163, D.172, D.177, R.178 Ligand excluded by PLIP EDO.13: 1 residues within 4Å: Chain D: M.27 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain D: Y.97 Chain F: M.359, D.360, Q.391, R.394 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain D: D.345, R.347 Ligand excluded by PLIP EDO.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain A: Y.97 Chain E: M.359, D.360, Q.391 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain E: E.201, W.203 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain F: G.14, Y.15, V.16, R.347 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain F: R.42, P.52, I.53 Ligand excluded by PLIP EDO.22: 2 residues within 4Å: Chain F: M.27, H.202 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egger, S. et al., Structure and mechanism of human UDP-glucose 6-dehydrogenase. J.Biol.Chem. (2011)

Release Date

2009-09-15

Peptides

UDP-glucose 6-dehydrogenase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

UDP-glucose 6-dehydrogenase