SMTL ID : 3iu4.1

anti NeuGcGM3 ganglioside chimeric antibody chP3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.27, S.28, R.31, Y.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.28 Salt bridges: A:R.31 SO4.2: 2 residues within 4Å: Chain A: S.7, K.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.8 Water bridges: A:K.210, A:K.210 Salt bridges: A:K.210 SO4.3: 7 residues within 4Å: Chain A: R.97, G.99, V.100, R.101, W.108, A.110 Chain B: Y.55 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.100, A:V.100, B:Y.55 Salt bridges: A:R.97, A:R.101 SO4.4: 4 residues within 4Å: Chain B: Q.37, K.39, Q.42, K.45 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.42 Water bridges: B:Q.37 Salt bridges: B:K.39, B:K.45 SO4.5: 3 residues within 4Å: Chain B: H.8, K.9, F.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.7, B:K.9, B:F.10 Salt bridges: B:H.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talavera, A. et al., Crystal structure of an anti-ganglioside antibody, and modelling of the functional mimicry of its NeuGc-GM3 antigen by an anti-idiotypic antibody. Mol.Immunol. (2009)

Release Date

2009-12-08

Peptides

chP3 Fab heavy chain: A
chP3 Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

chP3 Fab heavy chain

chP3 Fab light chain