SMTL ID : 3iu9.1 (1 other biounit)

M. tuberculosis methionine aminopeptidase with Ni inhibitor T07

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: D.134, D.145, E.272 Ligands: NI.2, T07.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.134, A:D.134, A:D.145, A:E.272, A:E.272 NI.2: 6 residues within 4Å: Chain A: D.145, H.208, E.241, E.272 Ligands: NI.1, T07.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.145, A:H.208, A:E.241, A:E.241, A:E.272

1 x T07: 5-[(2,4-dichlorobenzyl)sulfanyl]-4H-1,2,4-triazol-3-amine(Non-covalent)

T07.3: 16 residues within 4Å: Chain A: Y.30, S.96, T.97, Y.100, C.108, H.117, D.134, T.136, D.145, H.208, F.214, H.215, E.241, E.272 Ligands: NI.1, NI.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.97, A:T.136 Hydrogen bonds: A:H.117, A:H.215 Water bridges: A:H.215 Salt bridges: A:D.134, A:D.145, A:E.241, A:E.272 pi-Stacking: A:Y.100, A:F.214, A:F.214 Halogen bonds: A:Y.30

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: N.23 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.23 Water bridges: A:N.23, A:W.24

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: R.172, R.196 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J.P. et al., Catalysis and Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidase. J.Med.Chem. (2010)

Release Date

2010-01-12

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase

Related Entries With Identical Sequence