SMTL ID : 3iw6.1

Human p38 MAP Kinase in Complex with a Benzylpiperazin-Pyrrol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x PP0: ethyl 4-[(4-benzylpiperazin-1-yl)carbonyl]-1-ethyl-3,5-dimethyl-1H-pyrrole-2-carboxylate(Non-covalent)

PP0.1: 16 residues within 4Å: Chain A: V.30, V.38, A.51, K.53, L.75, L.104, T.106, L.108, M.109, G.110, A.111, D.112, N.115, A.157, L.167, L.171 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.30, A:K.53, A:L.75, A:L.104, A:T.106, A:L.108, A:D.112, A:A.157, A:L.171 Hydrogen bonds: A:M.109, A:G.110, A:D.112, A:N.115

3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 16 residues within 4Å: Chain A: P.191, E.192, L.195, W.197, H.199, Y.200, N.201, L.236, P.242, L.246, K.249, I.259, L.291, D.292, S.293, D.294 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.191, A:L.195, A:W.197, A:L.236, A:P.242, A:I.259, A:L.291 Hydrogen bonds: A:H.199, A:N.201, A:D.292, A:D.292, A:S.293, A:S.293, A:D.294 Water bridges: A:E.192 BOG.3: 5 residues within 4Å: Chain A: L.195, I.229, K.233, A.255, Y.258 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.195, A:I.229, A:A.255, A:Y.258, A:Y.258, A:Y.258 Hydrogen bonds: A:K.233, A:Y.258 BOG.4: 8 residues within 4Å: Chain A: R.70, L.74, V.83, I.146, I.147, H.148, R.149, D.168 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.83, A:I.146 Hydrogen bonds: A:R.70, A:I.147 Water bridges: A:I.147, A:R.149, A:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simard, J.R. et al., High-Throughput Screening To Identify Inhibitors Which Stabilize Inactive Kinase Conformations in p38alpha. J.Am.Chem.Soc. (2009)

Release Date

2009-11-17

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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