SMTL ID : 3iwd.1 (2 other biounits)

T. maritima AdoMetDC complex with 5'-Deoxy-5'-dimethyl thioadenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x M2T: 5'-deoxy-5'-(dimethyl-lambda~4~-sulfanyl)adenosine(Non-covalent)

M2T.1: 13 residues within 4Å: Chain A: F.49, L.50, Y.52, G.53, V.54, S.55 Chain B: T.7, W.8, P.9, E.10 Chain C: S.61, E.62 Chain D: X.1 7 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:T.7, C:E.62, C:E.62, C:E.62 pi-Cation interactions: B:W.8 pi-Stacking: A:F.49, A:F.49 M2T.2: 13 residues within 4Å: Chain A: E.62 Chain B: X.1 Chain C: F.49, L.50, Y.52, G.53, V.54, S.55 Chain D: H.6, T.7, W.8, P.9, E.10 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: D:T.7, A:E.62, A:E.62 pi-Cation interactions: D:W.8, C:F.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bale, S. et al., Complexes of Thermotoga maritimaS-adenosylmethionine decarboxylase provide insights into substrate specificity. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-02-09

Peptides

S-adenosylmethionine decarboxylase: AC
S-adenosylmethionine decarboxylase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
D

B
A

D
C

S-adenosylmethionine decarboxylase

S-adenosylmethionine decarboxylase

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