SMTL ID : 3iwj.1

Crystal structure of aminoaldehyde dehydrogenase 2 from Pisum sativum (PsAMADH2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 17 residues within 4Å: Chain A: I.158, T.159, W.161, K.185, P.186, S.187, E.188, G.218, P.219, G.222, A.223, F.236, T.237, G.238, S.239, T.242, I.246 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.159, A:K.185, A:E.188, A:S.239, A:T.242, A:T.242 NAD.6: 18 residues within 4Å: Chain B: I.158, T.159, W.161, K.185, P.186, S.187, E.188, G.218, P.219, G.222, A.223, F.236, T.237, G.238, S.239, T.242, K.245, I.246 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.159, B:K.185, B:E.188, B:S.239, B:T.242 Water bridges: B:W.161, B:W.161, B:K.245, B:K.245, B:Q.341, B:Q.341

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: I.28, D.99, L.189 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.28 NA.7: 3 residues within 4Å: Chain B: I.28, D.99, L.189 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.28, B:D.99, B:L.189

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: W.109, D.110, D.113, L.166, W.288, P.452, C.453 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.113, A:D.113, A:C.453 GOL.4: 8 residues within 4Å: Chain A: N.162, Y.163, M.167, W.170, I.293, C.294, S.295, W.459 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.162, A:C.294, A:S.295 GOL.5: 4 residues within 4Å: Chain A: E.473, W.474, D.477 Chain B: R.149 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.473, A:W.474, A:D.477, A:D.477, B:R.149 GOL.8: 8 residues within 4Å: Chain B: W.109, D.110, D.113, Y.163, L.166, P.452, C.453 Ligands: GOL.10 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.110, B:D.113, B:C.453 GOL.9: 4 residues within 4Å: Chain A: R.149 Chain B: E.473, W.474, D.477 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.473, A:R.149 Water bridges: A:R.149 GOL.10: 7 residues within 4Å: Chain B: Y.163, W.170, I.293, C.294, S.295, W.459 Ligands: GOL.8 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.294, B:S.295, B:S.295 GOL.11: 3 residues within 4Å: Chain B: K.44, A.223, T.227 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tylichova, M. et al., Structural and functional characterization of plant aminoaldehyde dehydrogenase from Pisum sativum with a broad specificity for natural and synthetic aminoaldehydes. J.Mol.Biol. (2010)

Release Date

2010-01-19

Peptides

Putative aminoaldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative aminoaldehyde dehydrogenase