SMTL ID : 3iwk.3 (5 other biounits)

Crystal structure of aminoaldehyde dehydrogenase 1 from Pisum sativum (PsAMADH1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: N.27, I.28, D.99, L.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.27, A:L.189 Water bridges: A:I.28 NA.3: 4 residues within 4Å: Chain B: N.27, I.28, D.99, L.189 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.27, B:D.99 Water bridges: B:I.28

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 19 residues within 4Å: Chain A: P.160, W.161, E.188, G.218, H.219, G.222, A.223, G.238, S.239, T.242, K.245, I.246, L.261, G.262, C.294, Q.341, K.344, E.393, F.395 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.160, A:F.395, A:F.395 Hydrogen bonds: A:E.188, A:G.222, A:S.239, A:S.239, A:K.245, A:Q.341, A:Q.341, A:K.344, A:E.393 Water bridges: A:K.344 NAD.4: 19 residues within 4Å: Chain B: P.160, W.161, E.188, G.218, H.219, G.222, A.223, G.238, S.239, T.242, K.245, I.246, L.261, G.262, C.294, Q.341, K.344, E.393, F.395 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:P.160, B:F.395, B:F.395 Hydrogen bonds: B:E.188, B:G.222, B:S.239, B:T.242, B:T.242, B:K.245, B:Q.341, B:Q.341, B:K.344, B:E.393 Water bridges: B:S.239

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain B: N.162, Y.163, M.167, W.170, E.260, I.293, C.294, S.295, W.459 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.162, B:C.294, B:S.295 Water bridges: B:S.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tylichova, M. et al., Structural and functional characterization of plant aminoaldehyde dehydrogenase from Pisum sativum with a broad specificity for natural and synthetic aminoaldehydes. J.Mol.Biol. (2010)

Release Date

2010-01-19

Peptides

Aminoaldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Aminoaldehyde dehydrogenase

Related Entries With Identical Sequence