SMTL ID : 3j0q.1

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x C- G- A- G- G- A- A: 40S ribosomal RNA fragment(Non-functional Binders)

C-G-A-G-G-A-A.1: 10 residues within 4Å: Chain C: G.1 Chain D: A.12, C.13 Chain R: G.30, G.31, G.32, C.33, C.41, C.42, G.43 No protein-ligand interaction detected (PLIP)

2 x U- U- C: mRNA fragment(Non-covalent)(Non-functional Binders)

U-U-C.2: 12 residues within 4Å: Chain A: C.19, G.31 Chain F: G.5, C.6, A.103, A.104 Chain H: Q.61, P.62 Chain Q: A.36, U.37, A.38, A.39 Protein-ligand interaction information (PLIP) not available U-U-C.3: 5 residues within 4Å: Chain R: U.34, C.35, A.36, U.37, A.38 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Budkevich, T. et al., Structure and dynamics of the Mammalian ribosomal pretranslocation complex. Mol.Cell (2011)

Release Date

2011-11-16

Peptides

Ribosomal protein S15: G
Ribosomal protein S23: H
Ribosomal protein S30: I
Ribosomal protein L10a: N
Ribosomal protein L10: O
Ribosomal protein L11: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

G
S

H
L

I
X

N
B

O
J

P
k

Ribosomal protein S15

Ribosomal protein S23

Ribosomal protein S30

Ribosomal protein L10a

Ribosomal protein L10

Ribosomal protein L11

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