SMTL ID : 3j4p.5 (4 other biounits)

Electron Microscopy Analysis of a Disaccharide Analog complex Reveals Receptor Interactions of Adeno-Associated Virus

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 4.80 Å

Oligo State

monomer

Ligands

1 x GU4- YYJ: 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose(Post Translational Modification)

GU4-YYJ.1: 4 residues within 4Å: Chain A: R.367, R.370 Ligands: NA.2, MG.3 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.370, A:R.370, A:R.367, A:R.370 Hydrogen bonds: A:R.367

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Ligands: GU4-YYJ.1 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 1 residues within 4Å: Ligands: GU4-YYJ.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, Q. et al., Electron microscopy analysis of a disaccharide analog complex reveals receptor interactions of adeno-associated virus. J.Struct.Biol. (2013)

Release Date

2013-10-16

Peptides

Capsid protein VP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Capsid protein VP1

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