SMTL ID : 3j9s.2 (2 other biounits)

Single particle cryo-EM structure of rotavirus VP6 at 2.6 Angstrom resolution

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.154 Ligands: CL.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.154

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.155 Ligands: ZN.1 Ligand excluded by PLIP

2 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.4: 2 residues within 4Å: Chain A: V.218, D.287 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grant, T. et al., Measuring the optimal exposure for single particle cryo-EM using a 2.6 angstrom reconstruction of rotavirus VP6. Elife (2015)

Release Date

2015-03-11

Peptides

Intermediate capsid protein VP6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Intermediate capsid protein VP6

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