SMTL ID : 3jb6.1

In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.30 Å

Oligo State

hetero-1-1-2-mer

Ligands

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 8 residues within 4Å: Chain A: N.35, R.37, R.40, D.144, R.147, Y.184, N.195, R.791 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.35, A:R.37, A:R.37, A:R.40, A:R.40, A:D.144, A:N.195 Salt bridges: A:R.37, A:R.147, A:R.147, A:E.180, A:R.791, A:R.791 pi-Stacking: A:Y.184, A:Y.184 pi-Cation interactions: A:R.37, A:R.37 GTP.2: 12 residues within 4Å: Chain B: G.356, A.357, G.358, K.359, T.360, S.361, S.382, D.384, D.412, R.520, Q.521, R.522 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.356, B:G.356, B:G.356, B:A.357, B:G.358, B:K.359, B:T.360, B:T.360, B:T.360, B:S.361, B:S.382, B:D.384, B:Q.521 Salt bridges: B:K.355, B:K.359, B:K.359 pi-Cation interactions: B:R.520

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus. Nature (2015)

Release Date

2015-10-28

Peptides

RNA-dependent RNA polymerase: A
Viral structural protein 4: B
VP1 CSP: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

RNA-dependent RNA polymerase

Viral structural protein 4

VP1 CSP

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