SMTL ID : 3jca.1

Core model of the Mouse Mammary Tumor Virus intasome

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.9, A:H.13, A:C.37, A:C.40 ZN.2: 5 residues within 4Å: Chain B: H.9, H.13, C.37, N.39, C.40 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.9, B:H.13, B:C.37, B:C.40 ZN.3: 4 residues within 4Å: Chain E: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.9, E:H.13, E:C.37, E:C.40 ZN.4: 5 residues within 4Å: Chain F: H.9, H.13, C.37, N.39, C.40 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.9, F:H.13, F:C.37, F:C.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ballandras-Colas, A. et al., Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function. Nature (2016)

Release Date

2016-02-17

Peptides

Integrase: ABEF
Integrase: CDGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
E

F
F

C
C

D
D

G
G

H
H

Integrase

Integrase