- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 12 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.2: 14 residues within 4Å:- Chain A: M.169, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, E.275, S.276, K.295, A.326, Q.330, A.348
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:Q.250, A:F.252, A:F.252, A:G.253, A:N.254, A:N.254, A:S.276, A:Q.330, A:Q.330
NAI.3: 17 residues within 4Å:- Chain A: H.85, R.86, C.115, D.119, V.120, P.121, F.122, R.459, Q.463, K.488, V.492
- Chain B: I.203, S.204, H.209, S.393, S.444, E.445
11 PLIP interactions:7 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:R.86, A:D.119, A:V.120, A:F.122, B:N.387, B:S.393, B:R.396
- Salt bridges: A:R.459
- pi-Cation interactions: A:R.86, A:R.86
- pi-Stacking: B:H.209
NAI.5: 14 residues within 4Å:- Chain B: M.169, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, E.275, S.276, K.295, A.326, Q.330, A.348
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:Q.250, B:F.252, B:F.252, B:G.253, B:N.254, B:N.254, B:S.276, B:Q.330, B:Q.330
NAI.6: 17 residues within 4Å:- Chain B: H.85, R.86, C.115, D.119, V.120, P.121, F.122, R.459, Q.463, K.488, V.492
- Chain C: I.203, S.204, H.209, S.393, S.444, E.445
11 PLIP interactions:4 interactions with chain C, 7 interactions with chain B- Hydrogen bonds: C:N.387, C:S.393, C:R.396, B:R.86, B:D.119, B:V.120, B:F.122
- pi-Stacking: C:H.209
- Salt bridges: B:R.459
- pi-Cation interactions: B:R.86, B:R.86
NAI.7: 17 residues within 4Å:- Chain A: I.203, S.204, H.209, S.393, S.444, E.445
- Chain C: H.85, R.86, C.115, D.119, V.120, P.121, F.122, R.459, Q.463, K.488, V.492
11 PLIP interactions:7 interactions with chain C, 4 interactions with chain A- Hydrogen bonds: C:R.86, C:D.119, C:V.120, C:F.122, A:N.387, A:S.393, A:R.396
- Salt bridges: C:R.459
- pi-Cation interactions: C:R.86, C:R.86
- pi-Stacking: A:H.209
NAI.9: 14 residues within 4Å:- Chain C: M.169, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, E.275, S.276, K.295, A.326, Q.330, A.348
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:Q.250, C:F.252, C:F.252, C:G.253, C:N.254, C:N.254, C:S.276, C:Q.330, C:Q.330
NAI.11: 14 residues within 4Å:- Chain D: M.169, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, E.275, S.276, K.295, A.326, Q.330, A.348
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:T.215, D:Q.250, D:F.252, D:F.252, D:G.253, D:N.254, D:N.254, D:S.276, D:Q.330, D:Q.330
NAI.12: 17 residues within 4Å:- Chain D: H.85, R.86, C.115, D.119, V.120, P.121, F.122, R.459, Q.463, K.488, V.492
- Chain E: I.203, S.204, H.209, S.393, S.444, E.445
10 PLIP interactions:6 interactions with chain D, 4 interactions with chain E- Hydrogen bonds: D:R.86, D:V.120, D:F.122, E:N.387, E:S.393, E:R.396
- Salt bridges: D:R.459
- pi-Cation interactions: D:R.86, D:R.86
- pi-Stacking: E:H.209
NAI.14: 14 residues within 4Å:- Chain E: M.169, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, E.275, S.276, K.295, A.326, Q.330, A.348
10 PLIP interactions:10 interactions with chain E- Hydrogen bonds: E:T.215, E:Q.250, E:F.252, E:F.252, E:G.253, E:N.254, E:N.254, E:S.276, E:Q.330, E:Q.330
NAI.15: 17 residues within 4Å:- Chain E: H.85, R.86, C.115, D.119, V.120, P.121, F.122, R.459, Q.463, K.488, V.492
- Chain F: I.203, S.204, H.209, S.393, S.444, E.445
10 PLIP interactions:4 interactions with chain F, 6 interactions with chain E- Hydrogen bonds: F:N.387, F:S.393, F:R.396, E:R.86, E:V.120, E:F.122
- pi-Stacking: F:H.209
- Salt bridges: E:R.459
- pi-Cation interactions: E:R.86, E:R.86
NAI.16: 17 residues within 4Å:- Chain D: I.203, S.204, H.209, S.393, S.444, E.445
- Chain F: H.85, R.86, C.115, D.119, V.120, P.121, F.122, R.459, Q.463, K.488, V.492
10 PLIP interactions:4 interactions with chain D, 6 interactions with chain F- Hydrogen bonds: D:N.387, D:S.393, D:R.396, F:R.86, F:V.120, F:F.122
- pi-Stacking: D:H.209
- Salt bridges: F:R.459
- pi-Cation interactions: F:R.86, F:R.86
NAI.18: 14 residues within 4Å:- Chain F: M.169, T.215, Q.250, G.251, F.252, G.253, N.254, V.255, E.275, S.276, K.295, A.326, Q.330, A.348
10 PLIP interactions:10 interactions with chain F- Hydrogen bonds: F:T.215, F:Q.250, F:F.252, F:F.252, F:G.253, F:N.254, F:N.254, F:S.276, F:Q.330, F:Q.330
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Borgnia, M.J. et al., Using Cryo-EM to Map Small Ligands on Dynamic Metabolic Enzymes: Studies with Glutamate Dehydrogenase. Mol.Pharmacol. (2016)
- Release Date
- 2016-04-27
- Peptides
- Glutamate dehydrogenase 1, mitochondrial: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 12 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Borgnia, M.J. et al., Using Cryo-EM to Map Small Ligands on Dynamic Metabolic Enzymes: Studies with Glutamate Dehydrogenase. Mol.Pharmacol. (2016)
- Release Date
- 2016-04-27
- Peptides
- Glutamate dehydrogenase 1, mitochondrial: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F