SMTL ID : 3jq0.1

Crystal structure of SusD superfamily protein (YP_001299712.1) from Bacteroides vulgatus ATCC 8482 at 1.13 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 4 residues within 4Å: Chain A: F.173, R.177, D.221, K.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.177 Water bridges: A:D.221

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: N.63, K.64, R.470 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.63, A:R.470, A:R.470 Water bridges: A:K.64, A:K.64 GOL.3: 8 residues within 4Å: Chain A: H.20, A.21, R.24, H.178, F.179, T.246, I.247, H.248 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.20, A:T.246, A:H.248 Water bridges: A:R.24, A:H.178 GOL.4: 2 residues within 4Å: Chain A: S.333, Y.334 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.334, A:Y.334 GOL.5: 3 residues within 4Å: Chain A: Y.305, W.316, T.317 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: Q.199, G.456, W.457 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.199, A:Q.199, A:W.457 Water bridges: A:R.198, A:D.458 SO4.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.8: 3 residues within 4Å: Chain A: R.310, N.311 Ligands: CL.9 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.311 Water bridges: A:N.311, A:N.311, A:N.311, A:N.311, A:N.311 Salt bridges: A:R.310

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 3 residues within 4Å: Chain A: R.310, N.311 Ligands: SO4.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of SusD superfamily protein (YP_001299712.1) from Bacteroides vulgatus ATCC 8482 at 1.13 A resolution. To be published

Release Date

2009-09-22

Peptides

SusD superfamily protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SusD superfamily protein