SMTL ID : 3jqo.1

Crystal structure of the outer membrane complex of a type IV secretion system

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-14-14-14-mer

Ligands

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain D: P.137, G.138, D.202, Q.203, D.206 Chain E: K.69 Chain H: G.99, D.100 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H Hydrogen bonds: D:D.202, H:D.100 MPD.3: 7 residues within 4Å: Chain 7: P.137, G.138, Q.139, D.202, Q.203, D.206 Chain b: D.100 2 PLIP interactions: 2 interactions with chain 7 Hydrophobic interactions: 7:P.137, 7:Q.139 MPD.4: 8 residues within 4Å: Chain a: P.137, G.138, D.202, Q.203, D.206 Chain b: K.69 Chain e: G.99, D.100 2 PLIP interactions: 1 interactions with chain b, 1 interactions with chain a Hydrogen bonds: b:K.69 Hydrophobic interactions: a:P.137

1 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.2: 11 residues within 4Å: Chain A: V.62, P.63, T.95 Chain D: G.96, G.97, V.105, F.106 Chain J: G.16, A.19, L.20, N.23 9 PLIP interactions: 3 interactions with chain D, 3 interactions with chain A, 3 interactions with chain J Hydrophobic interactions: D:V.105, D:F.106, D:F.106, A:V.62, A:P.63, J:A.19, J:L.20, J:N.23 Hydrogen bonds: A:T.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandran, V. et al., Structure of the outer membrane complex of a type IV secretion system. Nature (2009)

Release Date

2009-12-01

Peptides

TraF protein: ADGJMPSVY147ad
TraO protein: BEHKNQTWZ258be
TraN protein: CFILORUX0369cf

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

M
M

P
P

S
S

V
V

Y
Y

1
b

4
e

7
h

a
k

d
n

B
B

E
E

H
H

K
K

N
N

Q
Q

T
T

W
W

Z
Z

2
c

5
f

8
i

b
l

e
o

C
C

F
F

I
I

L
L

O
O

R
R

U
U

X
X

0
a

3
d

6
g

9
j

c
m

f
p

TraF protein

TraO protein

TraN protein