SMTL ID : 3js2.1 (1 other biounit)

Crystal structure of minimal kinase domain of fibroblast growth factor receptor 1 in complex with 5-(2-thienyl)nicotinic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x VM1: 5-(2-thienyl)nicotinic acid(Non-covalent)

VM1.1: 9 residues within 4Å: Chain A: L.36, F.41, A.64, I.97, V.113, E.114, Y.115, A.116, L.182 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.97, A:V.113, A:L.182 Hydrogen bonds: A:A.116, A:A.116 VM1.3: 9 residues within 4Å: Chain B: L.36, V.44, A.64, K.66, V.113, E.114, Y.115, A.116, L.182 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.44, B:L.182 Hydrogen bonds: B:A.116, B:A.116

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: R.122, R.179, T.209, N.211, R.213, W.218 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.209, A:T.209, A:N.211 Water bridges: A:R.179, A:R.179, A:T.209, A:N.211 Salt bridges: A:R.122, A:R.179, A:R.213 PO4.4: 5 residues within 4Å: Chain B: R.122, R.179, T.209, N.211, R.213 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.209, B:T.209, B:N.211 Water bridges: B:T.210, B:N.211, B:R.213 Salt bridges: B:R.122, B:R.179, B:R.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ravindranathan, K.P. et al., Discovery of novel fibroblast growth factor receptor 1 kinase inhibitors by structure-based virtual screening. J.Med.Chem. (2010)

Release Date

2010-02-23

Peptides

Basic fibroblast growth factor receptor 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Basic fibroblast growth factor receptor 1

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