SMTL ID : 3jti.1

Crystal structure of the complex formed between Phospholipase A2 with beta-amyloid fragment, Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met at 1.8 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x LYS- GLY- ALA- ILE- ILE- GLY- LEU- MET: octapeptide from Amyloid beta A4 protein(Non-covalent)

LYS-GLY-ALA-ILE-ILE-GLY-LEU-MET.1: 18 residues within 4Å: Chain A: L.2, F.5, K.6, W.18, Y.27, C.28, G.29, K.30, G.31, G.32, C.44, H.47, D.48, Y.51, N.52, E.55, Y.63 Ligands: CA.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.5, A:W.18 Hydrogen bonds: A:K.6, A:D.48, A:Y.63 Water bridges: A:N.1

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: Y.27, G.29, K.30, G.31, D.48 Ligands: LYS-GLY-ALA-ILE-ILE-GLY-LEU-MET.1, LYS-GLY-ALA-ILE-ILE-GLY-LEU-MET.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.29, A:G.31, A:D.48, A:D.48, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, N. et al., Crystal structure of the complex formed between Phospholipase A2 with beta-amyloid fragment, Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met at 1.8 A resolution. To be Published

Release Date

2010-07-21

Peptides

Phospholipase A2 isoform 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phospholipase A2 isoform 3

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