SMTL ID : 3jtm.1 (1 other biounit)

Structure of recombinant formate dehydrogenase from Arabidopsis thaliana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.327, P.335 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.336, A:T.336, A:T.336 Salt bridges: A:R.327 SO4.2: 2 residues within 4Å: Chain A: Y.157, R.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.157 Water bridges: A:R.158, A:N.299 Salt bridges: A:R.158

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: K.177, L.196, Q.197, M.198, A.199, L.202 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.177, A:K.177, A:A.199 Water bridges: A:A.172 GOL.4: 6 residues within 4Å: Chain A: V.26, E.27, N.28, A.29, R.33, V.45 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.26, A:N.28, A:R.33 Water bridges: A:R.33 GOL.5: 7 residues within 4Å: Chain A: P.70, F.71, G.94, I.95, N.119, G.308, Y.317 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.95, A:I.95, A:N.119 Water bridges: A:H.305, A:H.305, A:G.308, A:G.308 GOL.6: 6 residues within 4Å: Chain A: L.23, L.30, G.31, I.32, K.322 Ligands: GOL.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.322 GOL.7: 5 residues within 4Å: Chain A: N.119, V.123, I.175, N.255, A.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.119, A:A.256 GOL.9: 5 residues within 4Å: Chain A: R.263, P.285, P.289, D.291, H.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.263, A:R.263 GOL.10: 4 residues within 4Å: Chain A: M.135, Y.160, K.165, D.222 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.222 GOL.11: 4 residues within 4Å: Chain A: I.81, K.82, A.84, K.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.85 Water bridges: A:I.81 GOL.12: 6 residues within 4Å: Chain A: I.95, G.96, S.97, D.98, E.114, I.340 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.97, A:D.98, A:D.98 Water bridges: A:D.98, A:E.114 GOL.13: 3 residues within 4Å: Chain A: G.173, R.174 Ligands: GOL.16 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.174 Water bridges: A:G.173, A:G.173, A:N.227 GOL.15: 2 residues within 4Å: Chain A: K.322 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.322 GOL.16: 5 residues within 4Å: Chain A: A.172, G.173, D.194, L.196 Ligands: GOL.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.194 Water bridges: A:G.173

2 x AZI: AZIDE ION(Non-covalent)

AZI.8: 2 residues within 4Å: Chain A: E.332, D.333 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.333, A:D.333 AZI.14: 5 residues within 4Å: Chain A: L.134, N.137, G.276, G.277, N.299 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.134, A:N.299 Water bridges: A:N.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V.I. et al., Structure of recombinant formate dehydrogenase from Arabidopsis thaliana. to be published

Release Date

2010-09-15

Peptides

Formate dehydrogenase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Formate dehydrogenase, mitochondrial

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