SMTL ID : 3ju2.1

CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: M.148, Y.149, D.152, R.153, M.216 Chain B: P.212, T.213 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.213, A:M.148 Water bridges: B:T.213, A:D.152 GOL.2: 10 residues within 4Å: Chain A: W.39, R.67, V.104, L.145, Y.149, R.153, H.181, L.217, R.220, F.251 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.67, A:Y.149, A:R.153, A:R.220 Water bridges: A:R.67, A:E.143 GOL.4: 5 residues within 4Å: Chain A: D.229, G.232, I.233, R.236 Chain B: D.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.232 Water bridges: A:W.183 GOL.5: 7 residues within 4Å: Chain A: P.212, T.213 Chain B: M.148, Y.149, D.152, R.153, M.216 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:M.148, A:T.213 Water bridges: B:D.152, A:T.213 GOL.6: 10 residues within 4Å: Chain B: W.39, R.67, V.104, L.145, Y.149, R.153, H.181, L.217, R.220, F.251 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.67, B:Y.149, B:R.153, B:R.220 Water bridges: B:R.67, B:E.143, B:Y.149 GOL.8: 5 residues within 4Å: Chain A: D.116 Chain B: D.229, G.232, I.233, R.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.229, B:G.232 Water bridges: B:W.183

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: E.143, D.178, H.205, E.249 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.143, A:D.178, A:H.205, A:E.249, H2O.2 ZN.7: 4 residues within 4Å: Chain B: E.143, D.178, H.205, E.249 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.143, B:D.178, B:H.205, B:E.249, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti. To be Published

Release Date

2009-09-22

Peptides

uncharacterized protein SMc04130: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

uncharacterized protein SMc04130