- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DBB: D-ALPHA-AMINOBUTYRIC ACID(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 8 residues within 4Å:- Chain A: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, R.228
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.14, A:L.99, A:Y.100, A:Y.100
- Water bridges: A:T.226, A:R.228
GOL.8: 8 residues within 4Å:- Chain B: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, R.228
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.14, B:L.99, B:Y.100, B:Y.100
- Water bridges: B:T.226, B:R.228
GOL.14: 8 residues within 4Å:- Chain C: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, R.228
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.14, C:L.99, C:Y.100, C:Y.100
- Water bridges: C:T.226, C:R.228
GOL.20: 8 residues within 4Å:- Chain D: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, R.228
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:N.14, D:L.99, D:Y.100, D:Y.100
- Water bridges: D:T.226, D:R.228
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.1, H2O.1
CA.9: 4 residues within 4Å:- Chain B: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.10, B:Y.12, B:D.19, H2O.6, H2O.6
CA.15: 4 residues within 4Å:- Chain C: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.10, C:Y.12, C:D.19, H2O.11, H2O.11
CA.21: 4 residues within 4Å:- Chain D: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.10, D:Y.12, D:D.19, H2O.17, H2O.17
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.4: 4 residues within 4Å:- Chain A: E.8, D.10, D.19, H.24
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24, H2O.1, H2O.1
MN.10: 4 residues within 4Å:- Chain B: E.8, D.10, D.19, H.24
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24, H2O.6, H2O.6
MN.16: 4 residues within 4Å:- Chain C: E.8, D.10, D.19, H.24
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.8, C:D.10, C:D.19, C:H.24, H2O.11, H2O.12
MN.22: 4 residues within 4Å:- Chain D: E.8, D.10, D.19, H.24
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.8, D:D.10, D:D.19, D:H.24, H2O.17, H2O.17
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 3 residues within 4Å:- Chain A: R.228, D.235, A.236
Ligand excluded by PLIPCL.6: 3 residues within 4Å:- Chain A: N.14, D.16, R.228
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain B: R.228, D.235, A.236
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain B: N.14, D.16, R.228
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain C: R.228, D.235, A.236
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain C: N.14, D.16, R.228
Ligand excluded by PLIPCL.23: 3 residues within 4Å:- Chain D: R.228, D.235, A.236
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain D: N.14, D.16, R.228
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bezerra, E.H. et al., Structural analysis of ConBr reveals molecular correlation between the carbohydrate recognition domain and endothelial NO synthase activation. Biochem.Biophys.Res.Commun. (2011)
- Release Date
- 2010-12-08
- Peptides
- Concanavalin-Br: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DBB: D-ALPHA-AMINOBUTYRIC ACID(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bezerra, E.H. et al., Structural analysis of ConBr reveals molecular correlation between the carbohydrate recognition domain and endothelial NO synthase activation. Biochem.Biophys.Res.Commun. (2011)
- Release Date
- 2010-12-08
- Peptides
- Concanavalin-Br: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A