SMTL ID : 3jvb.1

Crystal structure of infectious baculovirus polyhedra

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-12-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.31 Chain G: K.31 Chain J: K.31 Ligands: SO4.7, SO4.10 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain A, 1 interactions with chain G Salt bridges: J:K.31, A:K.31, G:K.31 SO4.2: 5 residues within 4Å: Chain B: K.31 Chain E: K.31 Chain K: K.31 Ligands: SO4.5, SO4.11 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain E, 1 interactions with chain K Salt bridges: B:K.31, E:K.31, K:K.31 SO4.3: 5 residues within 4Å: Chain C: K.31 Chain F: K.31 Chain I: K.31 Ligands: SO4.6, SO4.9 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C, 1 interactions with chain I Salt bridges: F:K.31, C:K.31, I:K.31 SO4.4: 5 residues within 4Å: Chain D: K.31 Chain H: K.31 Chain L: K.31 Ligands: SO4.8, SO4.12 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain L, 1 interactions with chain H Salt bridges: D:K.31, L:K.31, H:K.31 SO4.5: 5 residues within 4Å: Chain B: K.31 Chain E: K.31 Chain K: K.31 Ligands: SO4.2, SO4.11 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain E, 1 interactions with chain K Salt bridges: B:K.31, E:K.31, K:K.31 SO4.6: 5 residues within 4Å: Chain C: K.31 Chain F: K.31 Chain I: K.31 Ligands: SO4.3, SO4.9 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C, 1 interactions with chain I Salt bridges: F:K.31, C:K.31, I:K.31 SO4.7: 5 residues within 4Å: Chain A: K.31 Chain G: K.31 Chain J: K.31 Ligands: SO4.1, SO4.10 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain A, 1 interactions with chain G Salt bridges: J:K.31, A:K.31, G:K.31 SO4.8: 5 residues within 4Å: Chain D: K.31 Chain H: K.31 Chain L: K.31 Ligands: SO4.4, SO4.12 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain L, 1 interactions with chain H Salt bridges: D:K.31, L:K.31, H:K.31 SO4.9: 5 residues within 4Å: Chain C: K.31 Chain F: K.31 Chain I: K.31 Ligands: SO4.3, SO4.6 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C, 1 interactions with chain I Salt bridges: F:K.31, C:K.31, I:K.31 SO4.10: 5 residues within 4Å: Chain A: K.31 Chain G: K.31 Chain J: K.31 Ligands: SO4.1, SO4.7 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain A, 1 interactions with chain G Salt bridges: J:K.31, A:K.31, G:K.31 SO4.11: 5 residues within 4Å: Chain B: K.31 Chain E: K.31 Chain K: K.31 Ligands: SO4.2, SO4.5 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain E, 1 interactions with chain K Salt bridges: B:K.31, E:K.31, K:K.31 SO4.12: 5 residues within 4Å: Chain D: K.31 Chain H: K.31 Chain L: K.31 Ligands: SO4.4, SO4.8 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain L, 1 interactions with chain H Salt bridges: D:K.31, L:K.31, H:K.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coulibaly, F. et al., The atomic structure of baculovirus polyhedra reveals the independent emergence of infectious crystals in DNA and RNA viruses. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-12-08

Peptides

Polyhedrin: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Polyhedrin