SMTL ID : 3jvy.1

HIV-1 Protease Mutant G86A with DARUNAVIR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: D.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.60, A:D.60 Water bridges: A:R.41

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: W.42, P.44, K.55 Ligand excluded by PLIP

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.3: 20 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, P.81, I.84 Chain B: D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, V.82, I.84 20 PLIP interactions: 10 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:P.81, A:I.84, B:I.50, B:V.82, B:I.84 Hydrogen bonds: A:D.30, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30 Water bridges: A:D.29, A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishima, R. et al., Highly conserved glycine 86 and arginine 87 residues contribute differently to the structure and activity of the mature HIV-1 protease. Proteins (2009)

Release Date

2009-12-08

Peptides

Gag-Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gag-Pol polyprotein

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