SMTL ID : 3jw6.1

Crystal structure of AcMNPV baculovirus polyhedra

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-12-mer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: K.231, E.232 Chain H: M.83, Q.138, I.153, R.154, V.156 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain A Hydrogen bonds: H:V.156 Water bridges: H:Q.138, A:E.232 EDO.2: 7 residues within 4Å: Chain B: K.231, E.232 Chain F: M.83, Q.138, I.153, R.154, V.156 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:V.156 Water bridges: F:Q.138, B:E.232 EDO.3: 7 residues within 4Å: Chain C: K.231, E.232 Chain E: M.83, Q.138, I.153, R.154, V.156 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:V.156 Water bridges: E:Q.138, C:E.232 EDO.4: 7 residues within 4Å: Chain D: K.231, E.232 Chain G: M.83, Q.138, I.153, R.154, V.156 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain G Water bridges: D:E.232, G:Q.138 Hydrogen bonds: G:V.156 EDO.5: 7 residues within 4Å: Chain E: K.231, E.232 Chain L: M.83, Q.138, I.153, R.154, V.156 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain L Water bridges: E:E.232, L:Q.138 Hydrogen bonds: L:V.156 EDO.6: 7 residues within 4Å: Chain F: K.231, E.232 Chain J: M.83, Q.138, I.153, R.154, V.156 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain J Water bridges: F:E.232, J:Q.138 Hydrogen bonds: J:V.156 EDO.7: 7 residues within 4Å: Chain G: K.231, E.232 Chain I: M.83, Q.138, I.153, R.154, V.156 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain G Hydrogen bonds: I:V.156 Water bridges: I:Q.138, G:E.232 EDO.8: 7 residues within 4Å: Chain H: K.231, E.232 Chain K: M.83, Q.138, I.153, R.154, V.156 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain H Hydrogen bonds: K:V.156 Water bridges: K:Q.138, H:E.232 EDO.9: 7 residues within 4Å: Chain D: M.83, Q.138, I.153, R.154, V.156 Chain I: K.231, E.232 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain I Hydrogen bonds: D:V.156 Water bridges: D:Q.138, I:E.232 EDO.10: 7 residues within 4Å: Chain B: M.83, Q.138, I.153, R.154, V.156 Chain J: K.231, E.232 3 PLIP interactions: 1 interactions with chain J, 2 interactions with chain B Water bridges: J:E.232, B:Q.138 Hydrogen bonds: B:V.156 EDO.11: 7 residues within 4Å: Chain A: M.83, Q.138, I.153, R.154, V.156 Chain K: K.231, E.232 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain K Hydrogen bonds: A:V.156 Water bridges: A:Q.138, K:E.232 EDO.12: 7 residues within 4Å: Chain C: M.83, Q.138, I.153, R.154, V.156 Chain L: K.231, E.232 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain L Hydrogen bonds: C:V.156 Water bridges: C:Q.138, L:E.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coulibaly, F. et al., The atomic structure of baculovirus polyhedra reveals the independent emergence of infectious crystals in DNA and RNA viruses. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-12-08

Peptides

Polyhedrin: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Polyhedrin

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