SMTL ID : 3jw8.3 (3 other biounits)

Crystal structure of human mono-glyceride lipase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 10 residues within 4Å: Chain A: L.165, A.168, N.169, S.172, A.173, G.227, L.230, V.234 Ligands: MRD.2, MRD.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.169, A:V.234 Hydrogen bonds: A:N.169, A:S.172 MPD.5: 10 residues within 4Å: Chain B: L.165, A.168, N.169, S.172, A.173, G.227, L.230, V.234 Ligands: MRD.6, MRD.8 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.169, B:V.234 Hydrogen bonds: B:N.169, B:S.172 MPD.9: 10 residues within 4Å: Chain C: L.165, A.168, N.169, S.172, A.173, G.227, L.230, V.234 Ligands: MRD.10, MRD.12 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:N.169, C:V.234 Hydrogen bonds: C:N.169, C:S.172 MPD.13: 10 residues within 4Å: Chain D: L.165, A.168, N.169, S.172, A.173, G.227, L.230, V.234 Ligands: MRD.14, MRD.16 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:N.169, D:V.234 Hydrogen bonds: D:N.169, D:S.172

12 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 6 residues within 4Å: Chain A: A.68, S.139, L.230, C.259 Ligands: MPD.1, MRD.3 No protein-ligand interaction detected (PLIP) MRD.3: 12 residues within 4Å: Chain A: G.67, A.68, E.70, H.138, S.139, I.196, L.201, Y.211, L.258, H.286, V.287 Ligands: MRD.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.70, A:I.196, A:L.201, A:L.258 Water bridges: A:A.68 MRD.4: 7 residues within 4Å: Chain A: S.172, K.177, A.181, L.193, G.227 Chain D: L.191 Ligands: MPD.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:K.177, A:L.193, D:L.191 Hydrogen bonds: A:S.172 MRD.6: 6 residues within 4Å: Chain B: A.68, S.139, L.230, C.259 Ligands: MPD.5, MRD.7 No protein-ligand interaction detected (PLIP) MRD.7: 12 residues within 4Å: Chain B: G.67, A.68, E.70, H.138, S.139, I.196, L.201, Y.211, L.258, H.286, V.287 Ligands: MRD.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:E.70, B:I.196, B:L.201, B:L.258 Water bridges: B:A.68 MRD.8: 7 residues within 4Å: Chain B: S.172, K.177, A.181, L.193, G.227 Chain C: L.191 Ligands: MPD.5 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:K.177, B:L.193, C:L.191 Hydrogen bonds: B:S.172 MRD.10: 6 residues within 4Å: Chain C: A.68, S.139, L.230, C.259 Ligands: MPD.9, MRD.11 No protein-ligand interaction detected (PLIP) MRD.11: 12 residues within 4Å: Chain C: G.67, A.68, E.70, H.138, S.139, I.196, L.201, Y.211, L.258, H.286, V.287 Ligands: MRD.10 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:E.70, C:I.196, C:L.201, C:L.258 Water bridges: C:A.68 MRD.12: 7 residues within 4Å: Chain B: L.191 Chain C: S.172, K.177, A.181, L.193, G.227 Ligands: MPD.9 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:K.177, C:L.193, B:L.191 Hydrogen bonds: C:S.172 MRD.14: 6 residues within 4Å: Chain D: A.68, S.139, L.230, C.259 Ligands: MPD.13, MRD.15 No protein-ligand interaction detected (PLIP) MRD.15: 12 residues within 4Å: Chain D: G.67, A.68, E.70, H.138, S.139, I.196, L.201, Y.211, L.258, H.286, V.287 Ligands: MRD.14 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:E.70, D:I.196, D:L.201, D:L.258 Water bridges: D:A.68 MRD.16: 7 residues within 4Å: Chain A: L.191 Chain D: S.172, K.177, A.181, L.193, G.227 Ligands: MPD.13 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:K.177, D:L.193, A:L.191 Hydrogen bonds: D:S.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertrand, T. et al., Structural basis for human monoglyceride lipase inhibition. J.Mol.Biol. (2010)

Release Date

2010-01-26

Peptides

MGLL protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

MGLL protein

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