SMTL ID : 3jyq.1

Quinate dehydrogenase from Corynebacterium glutamicum in complex with shikimate and NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 19 residues within 4Å: Chain A: V.133, G.134, G.136, G.137, V.138, D.158, L.159, R.163, A.201, T.202, P.203, M.206, A.213, V.228, V.229, Y.230, G.251, M.254, A.255 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.136, A:G.137, A:V.138, A:L.159, A:R.163, A:R.163, A:A.213, A:V.228, A:A.255 Water bridges: A:Q.258 Salt bridges: A:R.163 NAD.3: 19 residues within 4Å: Chain B: V.133, G.134, G.136, G.137, V.138, D.158, L.159, R.163, A.201, T.202, P.203, M.206, A.213, V.228, V.229, Y.230, G.251, M.254, A.255 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.136, B:G.137, B:V.138, B:L.159, B:R.163, B:R.163, B:A.213, B:V.228, B:A.255 Salt bridges: B:R.163

2 x SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

SKM.2: 9 residues within 4Å: Chain A: L.9, S.17, T.19, N.67, T.69, K.73, N.94, D.110, Q.258 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.19, A:T.19, A:N.67, A:K.73, A:K.73, A:N.94, A:Q.258 Water bridges: A:R.18, A:N.67, A:T.69, A:Q.258, A:Q.258 SKM.4: 9 residues within 4Å: Chain B: L.9, S.17, T.19, N.67, T.69, K.73, N.94, D.110, Q.258 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.19, B:N.67, B:T.69, B:K.73, B:K.73, B:N.94, B:Q.258, B:Q.258 Water bridges: B:R.18, B:N.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoppner, A. et al., Enzyme-substrate complexes of the quinate/shikimate dehydrogenase from Corynebacterium glutamicum enable new insights in substrate and cofactor binding, specificity, and discrimination. Biol.Chem. (2013)

Release Date

2010-10-27

Peptides

Quinate/shikimate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Quinate/shikimate dehydrogenase

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